Below you will find rig designs and code for your experimental needs. We will continue to update, so please check back periodically.
Feel free to use and modify for non-commercial purposes (contact Michael for bug reports and suggestions).
Post processing pipeline for 2-photon calcium imaging data
Contributors: Michael Goard, Gerald Pho, James Roney
Features: (1) Rigid/non-rigid registration, (2) Automatic and manual ROI detection GUI, (3) Adaptive neuropil subtraction
Wide field imaging scope design and software
Contributors: Michael Goard, Kevin Sit, Raquel Abreu
Features: (1) Scope design for measuring bulk calcium signals in superficial cortex, (2) MATLAB-based software for mapping higher visual regions
Head restraint hardware designs
Contributors: Michael Goard
Features: (1) Head plate, (2) Rig-mounted head plate holder, (3) Lightblocker for visual stimulation experiments
Automated behavior software
Contributors: Nigel Bess, Kevin Sit
Features: (1) General game engine for designing visual tasks using psychtoolbox, (2) Automated behavior software for running game engine software unsupervised on home cage training rigs