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Author anyAbdul-Wajid, Sarah Amdrup, E Belluzzi, L Belteton, Samuel ABorba, Cezar Borba, Cezar Borba, Ce Borba, C. Bostwick, Michaela Bourrat, Franck Brasnic, L Broman, Karl WBrown, Christopher DBurighel, Paolo Chiba, Shota Christiaen, Lionel Chung, Janeva Cubas, F Davidson, Brad Davis, Shannon WDavis, S WDelibaltov, Diana LDelibaltov, Diana Denker, Elsa Deschet, Karine DeTomaso, Anthony WDiaz, Heidi MoralesDong, Bo E, Guzman EJ, Spina El-Nachef, Danny Ericson, Vivian Ezal, Carin Ezal, C Ezal, C HFaure, Emmanuel Gallean, Benjamin Gaur, Utkarsh George, S Ghosh, Pratim Goebel, Michael Guduri, Bharath Guleria, Iraa Hackley, Christopher Hansen, C SHendrickson, Carolyn Hill, Matthew MHorie, Takeo Jiang, Di Jiang, Jiaxiang Johnson, David SJoly, Jean-Stéphane Khairallah, Stephanie MKim, Gil JungKim, Jennifer Kortholm, B Kourakis, Matthew JKourakis, Matthew Kourakis, Matthew J.Kourakis, MJ KS, Kosik Kumano, Gaku Kumano, G Kusakabe, Takehiro Lane, M CLaurent, Tao Legendre, Laurent Lemaire, Patrick Lin, Clarissa Manjunath, B SManjunath, B Manjunath, B. S.Marion, C DMarry, Mazz Matthysse, Ann GMedina, Juan Mejares, Emil Miao, Y. Miao, Yishen Miao, Yishen Moody, R Morales-Diaz, Heidi Mulholland, Erin Munro, Edwin MNakatani, Yuki Nakatani, Y Newman-Smith, Erin Nguyen, Ann HongNielsen, S PNishida, Hiroki Reeves, Wendy Rodoplu, Volkan Ruschel, Raphael Ryan, Kerrianne Salas, Priscilla Satoh, Noriyuki Schwennicke, Shea Schwennicke, S Shailja, S. Sidow, Arend Silva, Nathan Smith, William Smith, William CSmith, W CSmith, Eleanor LSmith, William C.Smith, Haley MSmith, WC Smith, Jianan DengWilliaSteele, K Stupka, Elia Szymanski, Daniel BTresser, Jason WTresser, Jason Tsuda, Motoyuki Veeman, Michael Veeman, Michael TVernier, Philippe Vinaithirthan, Vall WC, Smith White, Alan RWilliams, Melanie Winkley, Konner MZabriskie, Amanda Zhang, Angela Zhang, A.

Type anyJournal Article

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Year any2023202220212020201920182017201620152013201120102009200820072006200520042003200220012000199919971966

Keyword anyActinsActivinsAdaptor Proteins, Signal TransducingAgrobacterium tumefaciensAlgorithmsAmino Acid SequenceAnimalsAnimals, Genetically ModifiedApoptosisAquacultureBase PairingBase SequenceBehavior, Animalbeta-GalactosidaseBiological EvolutionBiological MarkersBlastomeresBlood CellsBlotting, NorthernBlotting, SouthernBody PatterningBone Morphogenetic Protein 4Bone Morphogenetic Protein 7Bone Morphogenetic ProteinsBrainButadienesCaliforniaCarrier ProteinsCell CommunicationCell DivisionCell LineageCell MembraneCell MovementCell NucleusCell PolarityCell ShapeCell SizeCentral Nervous SystemChordataChordata, NonvertebrateChromosome MappingChromosomesCiona intestinalisCloning, MolecularCloning, OrganismCongenital AbnormalitiesConnexinsConserved SequenceCrosses, GeneticCryopreservationCysteineCytogenetic AnalysisDextransDNADNA Mutational AnalysisDNA PrimersDNA, ComplementaryDNA-Binding ProteinsDose-Response Relationship, DrugDumping SyndromeEarEctodermElectroporationEmbryo, NonmammalianEmbryonic and Fetal DevelopmentEmbryonic DevelopmentEmbryonic InductionEndodermEnzyme ActivationEpidermisEthylnitrosoureaEvolution, MolecularExtremitiesEye ProteinsFemaleFertilization in VitroFetal ProteinsFibroblast Growth FactorsFluorescent DyesFollistatinGanglia, InvertebrateGastrectomyGastrointestinal TractGastrulaGene Expression RegulationGene Expression Regulation, DevelopmentalGene LibraryGenesGenes, ReporterGenetic Complementation TestGenetic MarkersGenetic TechniquesGenomicsGillsGlobinsGlucose Tolerance TestGlucosyltransferasesGlycoproteinsGreen Fluorescent ProteinsHeartHedgehog ProteinsHematopoietic Stem CellsHistocytochemistryHomeodomain ProteinsHu Paraneoplastic Encephalomyelitis AntigensHumansHybridization, GeneticImage EnhancementImage Interpretation, Computer-AssistedImaging, Three-DimensionalImmunohistochemistryIn Situ HybridizationInbreedingIntercellular JunctionsIntercellular Signaling Peptides and ProteinsLamininLarvaLaser TherapyLuminescent ProteinsMaleMAP Kinase Signaling SystemMarine BiologyMelaninsMesodermMetalloendopeptidasesMetamorphosis, BiologicalMiceMice, KnockoutMicroinjectionsMicroscopy, ConfocalMitogen-Activated Protein Kinase KinasesModels, BiologicalModels, GeneticMolecular Sequence DataMorphogenesisMosaicismMouthMultigene FamilyMusclesMutagenesisMutagenesis, Site-DirectedMutationMyoD ProteinNerve Tissue ProteinsNervous SystemNeural Cell Adhesion MoleculesNeural CrestNeural PlateNeurogenesisNitrilesNotochordNuclear ProteinsNucleic Acid Amplification TechniquesOligonucleotides, AntisenseOrgan Culture TechniquesOrgan SizeOrgan SpecificityOrganizers, EmbryonicOvotesticular Disorders of Sex DevelopmentPattern Recognition, AutomatedPhenotypePhosphoproteinsPhylogenyPigmentationPilot ProjectsPituitary GlandPlasmidsPolymerase Chain ReactionPolymorphism, GeneticPolymorphism, Restriction Fragment LengthPolymorphism, Single NucleotidePopulation DynamicsPostgastrectomy SyndromesPostureProgramming, LinearPromoter Regions, GeneticProtein BiosynthesisProtein FoldingProtein Kinase InhibitorsProtein Structure, TertiaryProtein Synthesis InhibitorsProteinsProto-Oncogene ProteinsReceptor Protein-Tyrosine KinasesReceptors, Fibroblast Growth FactorReceptors, Transforming Growth Factor betaRecombinant Fusion ProteinsRecombinant ProteinsReference StandardsRegulatory Sequences, Nucleic AcidReproducibility of ResultsReproductionReverse Transcriptase Polymerase Chain ReactionRhodaminesRNARNA, MessengerSeawaterSelection, GeneticSense OrgansSensitivity and SpecificitySequence AlignmentSequence Analysis, DNASequence HomologySequence Homology, Amino AcidSexual Behavior, AnimalSignal TransductionSmad2 ProteinSomitesSpecies SpecificitySpermatozoaSyntenyT-Box Domain ProteinsTailTime FactorsTissue DistributionTrans-ActivatorsTranscription FactorsTransforming Growth Factor betaTransgenesTroponin IUrochordataVideo RecordingWnt ProteinsXenopusXenopus laevisXenopus ProteinsZebrafish Proteins

Found 60 results

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2023

Jiang J, Goebel M, Borba C, Smith W, Manjunath BS.  2023.  A robust approach to 3D neuron shape representation for quantification and classification.. BMC Bioinformatics. 24(1):366.

Chung J, Newman-Smith E, Kourakis MJ, Miao Y, Borba C, Medina J, Laurent T, Gallean B, Faure E, Smith WC.  2023.  A single oscillating proto-hypothalamic neuron gates taxis behavior in the primitive chordate Ciona.. Curr Biol. 33(16)

Borba C, Kourakis MJ, Miao Y, Guduri B, Smith JDengWillia.  2023.  A whole nervous system atlas of glutamate receptors reveals distinct receptor roles in sensorimotor circuits. bioRxiv. 2023.04.18.537384

2022

Zhang A, Shailja S., Borba C, Miao Y, Goebel M, Ruschel R, Ryan K, Smith W, Manjunath B.S.  2022.  Automatic classification and neurotransmitter prediction of synapses in electron microscopy. Biological Imaging. 2 automatic-classification-and-neurotransmitter-prediction-of-synapses-in-electron-microscopy.pdf (1.85 MB)

2021

Zhang A., Shailja S., Borba C., Miao Y..  2021.  Automatic Detection and Neurotransmitter Prediction of Synapses in Electron Microscopy. BioRxiv . 2021.11.02.467022

Kourakis MJ, Bostwick M, Zabriskie A, Smith WC.  2021.  Disruption of left-right axis specification in Ciona induces molecular, cellular, and functional defects in asymmetric brain structures.. BMC Biol. 19(1):141.

Borba C, Kourakis MJ, Schwennicke S, Brasnic L, Smith WC.  2021.  Fold Change Detection in Visual Processing.. Front. Neural Circuits 15:705161.. 15

Smith HM, Khairallah SM, Nguyen AHong, Newman-Smith E, Smith WC.  2021.  Misregulation of cell adhesion molecules in the Ciona neural tube closure mutant bugeye.. Dev Biol.

2020

Bostwick M, Smith EL, Borba C, Newman-Smith E, Guleria I, Kourakis MJ, Smith WC.  2020.  Antagonistic Inhibitory Circuits Integrate Visual and Gravitactic Behaviors.. Curr Biol. 30(4):600-609.e2.

Borba C, Schwennicke S, Kourakis MJ, Smith WC.  2020.  Deep origins of chordate midbrain visual processing centers. BioRxiv.

Winkley KM, Kourakis MJ, DeTomaso AW, Veeman MT, Smith WC.  2020.  Tunicate gastrulation.. Curr Top Dev Biol. 136:219-242.

2019

Kourakis MJ, Borba C, Zhang A, Newman-Smith E, Salas P, Manjunath B, Smith WC.  2019.  Parallel visual circuitry in a basal chordate.. Elife. 8

2018

Smith WC.  2018.  Cellular Processes of Notochord Formation.. Adv Exp Med Biol. 1029:165-177.

Salas P, Vinaithirthan V, Newman-Smith E, Kourakis MJ, Smith WC.  2018.  Photoreceptor specialization and the visuomotor repertoire of the primitive chordate .. J Exp Biol. 221(Pt 7)

2017

EJ S, E G, KS K, WC S.  2017.  A microRNA-mRNA expression network during oral siphon regeneration in Ciona. Development. 144(10)

2016

Diaz HMorales, Mejares E, Newman-Smith E, Smith WC.  2016.  ACAM, a novel member of the neural IgCAM family, mediates anterior neural tube closure in a primitive chordate.. Dev Biol. 406(1)

Delibaltov DL, Gaur U, Kim J, Kourakis M, Newman-Smith E, Smith W, Belteton SA, Szymanski DB, Manjunath BS.  2016.  CellECT: cell evolution capturing tool.. BMC Bioinformatics. 17(1):88.

2015

Kourakis MJ, Smith WC.  2015.  An organismal perspective on C. intestinalis development, origins and diversification.. Elife. 4

Newman-Smith E, Kourakis MJ, Reeves W, Veeman M, Smith WC.  2015.  Reciprocal and dynamic polarization of planar cell polarity core components and myosin.. Elife. 4

Abdul-Wajid S, Morales-Diaz H, Khairallah SM, Smith WC.  2015.  T-type Calcium Channel Regulation of Neural Tube Closure and EphrinA/EPHA Expression.. Cell Rep. 13(4):829-39.

2013

Delibaltov DL, Ghosh P, Rodoplu V, Veeman M, Smith W, Manjunath BS.  2013.  A linear program formulation for the segmentation of Ciona membrane volumes.. Med Image Comput Comput Assist Interv. 16(Pt 1):444-51.

Hackley C, Mulholland E, Kim GJung, Newman-Smith E, Smith WC.  2013.  A transiently expressed connexin is essential for anterior neural plate development in Ciona intestinalis.. Development. 140(1):147-55.

Veeman MT, Smith WC.  2013.  Whole-organ cell shape analysis reveals the developmental basis of ascidian notochord taper.. Dev Biol. 373(2):281-9.

2011

Delibaltov D, Ghosh P, Veeman M, Smith W, Manjunath BS.  2011.  AN AUTOMATIC FEATURE BASED MODEL FOR CELL SEGMENTATION FROM CONFOCAL MICROSCOPY VOLUMES.. Proc IEEE Int Symp Biomed Imaging. :199-203.

Veeman MT, Chiba S, Smith WC.  2011.  Ciona genetics.. Methods Mol Biol. 770:401-22.

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