Publications

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Ewe CKiang, Cleuren YNTorres, Flowers SE, Alok G, Snell RG, Rothman JH.  2020.  Natural cryptic variation in epigenetic modulation of an embryonic gene regulatory network.. Proc Natl Acad Sci U S A. 117(24):13637-13646.
Callander DC, Alcorn MR, Birsoy B, Rothman JH.  2014.  Natural reversal of left-right gut/gonad asymmetry in C. elegans males is independent of embryonic chirality.. Genesis. 52(6):581-7.
Joshi PM, Rothman JH.  2015.  NEGotiating Cell Identity through Regulated Cytoplasmic Polyadenylation.. Dev Cell. 34(1):1-2.
Joshi PM, Rothman JH.  2005.  Nematode gastrulation: having a BLASTocoel!. Curr Biol. 15(13):R495-8.
Rothman JH, Still WC.  1999.  A new generation of fluorescent chemosensors demonstrate improved analyte detection sensitivity and photobleaching resistance.. Bioorg Med Chem Lett. 9(4):509-12.
Pekarsky Y, Campiglio M, Siprashvili Z, Druck T, Sedkov Y, Tillib S, Draganescu A, Wermuth P, Rothman JH, Huebner K et al..  1998.  Nitrilase and Fhit homologs are encoded as fusion proteins in Drosophila melanogaster and Caenorhabditis elegans.. Proc Natl Acad Sci U S A. 95(15):8744-9.
Broitman-Maduro G, Maduro MF, Rothman JH.  2005.  The noncanonical binding site of the MED-1 GATA factor defines differentially regulated target genes in the C. elegans mesendoderm.. Dev Cell. 8(3):427-33.
Rothman JH, Richards WG.  1996.  Novel Hoogsteen-like bases for configurational recognition of the T-A base pair by DNA triplex formation.. Biopolymers. 39(6):795-812.
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Rothman JH, Hunter CP, Valls LA, Stevens TH.  1986.  Overproduction-induced mislocalization of a yeast vacuolar protein allows isolation of its structural gene.. Proc Natl Acad Sci U S A. 83(10):3248-52.
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Ammerer G, Hunter CP, Rothman JH, Saari GC, Valls LA, Stevens TH.  1986.  PEP4 gene of Saccharomyces cerevisiae encodes proteinase A, a vacuolar enzyme required for processing of vacuolar precursors.. Mol Cell Biol. 6(7):2490-9.
Gendreau SB, Moskowitz IP, Terns RM, Rothman JH.  1994.  The potential to differentiate epidermis is unequally distributed in the AB lineage during early embryonic development in C. elegans.. Dev Biol. 166(2):770-81.
Rothman JH, Stevens TH.  1986.  Protein sorting in yeast: mutants defective in vacuole biogenesis mislocalize vacuolar proteins into the late secretory pathway.. Cell. 47(6):1041-51.
Valls LA, Hunter CP, Rothman JH, Stevens TH.  1987.  Protein sorting in yeast: the localization determinant of yeast vacuolar carboxypeptidase Y resides in the propeptide.. Cell. 48(5):887-97.
Kane PM, Yamashiro CT, Rothman JH, Stevens TH.  1989.  Protein sorting in yeast: the role of the vacuolar proton-translocating ATPase.. J Cell Sci Suppl. 11:161-78.
Rothman JH, Yamashiro CT, Kane PM, Stevens TH.  1989.  Protein targeting to the yeast vacuole.. Trends Biochem Sci. 14(8):347-50.
Rothman JH, Raymond CK, Gilbert T, O'Hara PJ, Stevens TH.  1990.  A putative GTP binding protein homologous to interferon-inducible Mx proteins performs an essential function in yeast protein sorting.. Cell. 61(6):1063-74.
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Dineen A, Nishimura EOsborne, Goszczynski B, Rothman JH, McGhee JD.  2018.  Quantitating transcription factor redundancy: The relative roles of the ELT-2 and ELT-7 GATA factors in the C. elegans endoderm.. Dev Biol. 435(2):150-161.
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Derry WB, Bierings R, van Iersel M, Satkunendran T, Reinke V, Rothman JH.  2007.  Regulation of developmental rate and germ cell proliferation in Caenorhabditis elegans by the p53 gene network.. Cell Death Differ. 14(4):662-70.
Kontani K, Moskowitz IPG, Rothman JH.  2005.  Repression of cell-cell fusion by components of the C. elegans vacuolar ATPase complex.. Dev Cell. 8(5):787-94.
Putzke AP, Rothman JH.  2010.  Repression of Wnt signaling by a Fer-type nonreceptor tyrosine kinase.. Proc Natl Acad Sci U S A. 107(37):16154-9.
Zhu J, Fukushige T, McGhee JD, Rothman JH.  1998.  Reprogramming of early embryonic blastomeres into endodermal progenitors by a Caenorhabditis elegans GATA factor.. Genes Dev. 12(24):3809-14.
Maduro MF, Meneghini MD, Bowerman B, Broitman-Maduro G, Rothman JH.  2001.  Restriction of mesendoderm to a single blastomere by the combined action of SKN-1 and a GSK-3beta homolog is mediated by MED-1 and -2 in C. elegans.. Mol Cell. 7(3):475-85.
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Ferguson KC, Heid PJ, Rothman JH.  1996.  The SL1 trans-spliced leader RNA performs an essential embryonic function in Caenorhabditis elegans that can also be supplied by SL2 RNA.. Genes Dev. 10(12):1543-56.
Kodama Y, Rothman JH, Sugimoto A, Yamamoto M.  2002.  The stem-loop binding protein CDL-1 is required for chromosome condensation, progression of cell death and morphogenesis in Caenorhabditis elegans.. Development. 129(1):187-96.
Ewe CKiang, Alok G, Rothman JH.  2020.  Stressful development: integrating endoderm development, stress, and longevity.. Dev Biol. 471:34-48.

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